HL_9VTH_019

3D structure

PDB id

9VTH (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

CCUACG

Length

6 nucleotides

Bulged bases

9VTH|1|11|C|785

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9VTH_019 not in the Motif Atlas

Homologous match to HL_9H3G_092

Geometric discrepancy: 0.3776

The information below is about HL_9H3G_092

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34080.1

Basepair signature

cWW-cWH-F

Number of instances in this motif group

4

Unit IDs

9VTH|1|11|C|781
9VTH|1|11|C|782
9VTH|1|11|U|783
9VTH|1|11|A|784
9VTH|1|11|C|785
9VTH|1|11|G|786

Current chains

Chain 11

18S rRNA

Nearby chains

Chain SZ

40S ribosomal protein S24