HL_9VTH_023

3D structure

PDB id

9VTH (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

AGAAAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9VTH_023 not in the Motif Atlas

Homologous match to HL_9H3G_097

Geometric discrepancy: 0.0658

The information below is about HL_9H3G_097

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34789.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

456

Unit IDs

9VTH|1|11|A|1087
9VTH|1|11|G|1088
9VTH|1|11|A|1089
9VTH|1|11|A|1090
9VTH|1|11|A|1091
9VTH|1|11|U|1092

Current chains

Chain 11

18S rRNA

Nearby chains

Chain SD

Small ribosomal subunit protein uS5

Chain Sb

40S ribosomal protein S26