HL_9VTH_026

3D structure

PDB id

9VTH (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

ACUGAGAGCU

Length

10 nucleotides

Bulged bases

9VTH|1|11|G|1246, 9VTH|1|11|G|1248

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9VTH_026 not in the Motif Atlas

Homologous match to HL_9H3G_100

Geometric discrepancy: 0.132

The information below is about HL_9H3G_100

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_98423.6

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

9VTH|1|11|A|1241
9VTH|1|11|C|1242
9VTH|1|11|U|1243
9VTH|1|11|G|1244
9VTH|1|11|A|1245
9VTH|1|11|G|1246
9VTH|1|11|A|1247
9VTH|1|11|G|1248
9VTH|1|11|C|1249
9VTH|1|11|U|1250

Current chains

Chain 11

18S rRNA

Nearby chains

Chain SL

40S ribosomal protein S29

Chain SO

40S ribosomal protein S15-like

Chain Sf

Ubiquitin-40S ribosomal protein S27a-like