HL_9VTH_027

3D structure

PDB id

9VTH (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

AGCGAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9VTH_027 not in the Motif Atlas

Homologous match to HL_9H3G_101

Geometric discrepancy: 0.1149

The information below is about HL_9H3G_101

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34789.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

456

Unit IDs

9VTH|1|11|A|1299
9VTH|1|11|G|1300
9VTH|1|11|C|1301
9VTH|1|11|G|1302
9VTH|1|11|A|1303
9VTH|1|11|U|1304

Current chains

Chain 11

18S rRNA

Nearby chains

Chain SA

Small ribosomal subunit protein uS2

Chain SD

Small ribosomal subunit protein uS5