HL_9VTH_028

3D structure

PDB id

9VTH (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

GUUAAUUC

Length

8 nucleotides

Bulged bases

9VTH|1|11|U|1317

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9VTH_028 not in the Motif Atlas

Homologous match to HL_9H3G_102

Geometric discrepancy: 0.0868

The information below is about HL_9H3G_102

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_63894.5

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

25

Unit IDs

9VTH|1|11|G|1312
9VTH|1|11|U|1313
9VTH|1|11|U|1314
9VTH|1|11|A|1315
9VTH|1|11|A|1316
9VTH|1|11|U|1317
9VTH|1|11|U|1318
9VTH|1|11|C|1319

Current chains

Chain 11

18S rRNA

Nearby chains

Chain SW

40S ribosomal protein S17-like