HL_9VTH_029

3D structure

PDB id

9VTH (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

GUAUCC

Length

6 nucleotides

Bulged bases

9VTH|1|11|U|1364, 9VTH|1|11|U|1366, 9VTH|1|11|C|1367

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9VTH_029 not in the Motif Atlas

Homologous match to HL_9H3G_103

Geometric discrepancy: 0.3588

The information below is about HL_9H3G_103

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33487.2

Basepair signature

cWW-cWW

Number of instances in this motif group

3

Unit IDs

9VTH|1|11|G|1363
9VTH|1|11|U|1364
9VTH|1|11|A|1365
9VTH|1|11|U|1366
9VTH|1|11|C|1367
9VTH|1|11|C|1368

Current chains

Chain 11

18S rRNA

Nearby chains

Chain SG

40S ribosomal protein S16

Chain SX

40S ribosomal protein S19-3-like