HL_9VTH_042

3D structure

PDB id

9VTH (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

UAAGCAUA

Length

8 nucleotides

Bulged bases

9VTH|1|14|A|38, 9VTH|1|14|A|41

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9VTH_042 not in the Motif Atlas

Homologous match to HL_9PN5_001

Geometric discrepancy: 0.0885

The information below is about HL_9PN5_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02262.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

38

Unit IDs

9VTH|1|14|U|36
9VTH|1|14|A|37
9VTH|1|14|A|38
9VTH|1|14|G|39
9VTH|1|14|C|40
9VTH|1|14|A|41
9VTH|1|14|U|42
9VTH|1|14|A|43

Current chains

Chain 14

25S rRNA

Nearby chains

Chain LI

60s ribosomal protein l27a-3

Chain LS

60S ribosomal protein L13

Chain LU

Ribosomal protein L15

Chain Lp

60S ribosomal protein L44