HL_9VTH_048

3D structure

PDB id

9VTH (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

GUGAGAGCC

Length

9 nucleotides

Bulged bases

9VTH|1|14|G|215, 9VTH|1|14|A|216, 9VTH|1|14|G|217

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9VTH_048 not in the Motif Atlas

Homologous match to HL_9H3G_011

Geometric discrepancy: 0.1215

The information below is about HL_9H3G_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27670.7

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

18

Unit IDs

9VTH|1|14|G|213
9VTH|1|14|U|214
9VTH|1|14|G|215
9VTH|1|14|A|216
9VTH|1|14|G|217
9VTH|1|14|A|218
9VTH|1|14|G|219
9VTH|1|14|C|220
9VTH|1|14|C|221

Current chains

Chain 14

25S rRNA

Nearby chains

Chain 13

5.8S ribosomal RNA; 5.8S rRNA

Chain LD

60S ribosomal protein L4-like

Chain LN

60S ribosomal protein L26-1