HL_9VTH_051

3D structure

PDB id

9VTH (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

CGCGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9VTH_051 not in the Motif Atlas

Homologous match to HL_9H3G_014

Geometric discrepancy: 0.0705

The information below is about HL_9H3G_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34789.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

456

Unit IDs

9VTH|1|14|C|354
9VTH|1|14|G|355
9VTH|1|14|C|356
9VTH|1|14|G|357
9VTH|1|14|A|358
9VTH|1|14|G|359

Current chains

Chain 14

25S rRNA

Nearby chains

Chain LD

60S ribosomal protein L4-like

Chain Lk

Ribosomal protein L37

Chain Lm

60S ribosomal protein L39-3