HL_9VTH_055

3D structure

PDB id

9VTH (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

9VTH|1|14|U|600

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9VTH_055 not in the Motif Atlas

Homologous match to HL_9H3G_019

Geometric discrepancy: 0.1783

The information below is about HL_9H3G_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_61337.7

Basepair signature

cWW-tSW-F

Number of instances in this motif group

72

Unit IDs

9VTH|1|14|C|598
9VTH|1|14|U|599
9VTH|1|14|U|600
9VTH|1|14|C|601
9VTH|1|14|G|602
9VTH|1|14|G|603

Current chains

Chain 14

25S rRNA

Nearby chains

Chain LD

60S ribosomal protein L4-like

Chain LP

60S ribosomal protein L7-4-like

Chain LQ

60S ribosomal protein L6-like isoform X1