HL_9VTH_061

3D structure

PDB id

9VTH (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

GGAAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9VTH_061 not in the Motif Atlas

Homologous match to HL_9H3G_025

Geometric discrepancy: 0.3414

The information below is about HL_9H3G_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34789.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

456

Unit IDs

9VTH|1|14|G|854
9VTH|1|14|G|855
9VTH|1|14|A|856
9VTH|1|14|A|857
9VTH|1|14|A|858
9VTH|1|14|C|859

Current chains

Chain 14

25S rRNA

Nearby chains

Chain 11

Small subunit ribosomal RNA; SSU rRNA

Chain Lq

60S ribosomal protein L37a

Chain SM

40S ribosomal protein S13

Chain SN

40S ribosomal protein S11