HL_9VTH_062

3D structure

PDB id

9VTH (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

ACGUGCAAAU

Length

10 nucleotides

Bulged bases

9VTH|1|14|U|889, 9VTH|1|14|A|893, 9VTH|1|14|A|894

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9VTH_062 not in the Motif Atlas

Homologous match to HL_9PN5_020

Geometric discrepancy: 0.085

The information below is about HL_9PN5_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50204.4

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

13

Unit IDs

9VTH|1|14|A|886
9VTH|1|14|C|887
9VTH|1|14|G|888
9VTH|1|14|U|889
9VTH|1|14|G|890
9VTH|1|14|C|891
9VTH|1|14|A|892
9VTH|1|14|A|893
9VTH|1|14|A|894
9VTH|1|14|U|895

Current chains

Chain 14

25S rRNA

Nearby chains

Chain LC

60S ribosomal protein L3

Chain LL

60S ribosomal protein L17-1 isoform X2

Chain Lk

Ribosomal protein L37