HL_9VTH_066

3D structure

PDB id

9VTH (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

CUUUGUUG

Length

8 nucleotides

Bulged bases

9VTH|1|14|U|1093

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9VTH_066 not in the Motif Atlas

Homologous match to HL_9H3G_030

Geometric discrepancy: 0.1806

The information below is about HL_9H3G_030

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_63894.5

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

25

Unit IDs

9VTH|1|14|C|1088
9VTH|1|14|U|1089
9VTH|1|14|U|1090
9VTH|1|14|U|1091
9VTH|1|14|G|1092
9VTH|1|14|U|1093
9VTH|1|14|U|1094
9VTH|1|14|G|1095

Current chains

Chain 14

25S rRNA

Nearby chains

Chain LK

60S ribosomal protein L5-like

Chain LY

60S ribosomal protein L21-1-like

Chain Ld

60S ribosomal protein L29