HL_9VTH_069
3D structure
- PDB id
- 9VTH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- CAAGUGCCAGG
- Length
- 11 nucleotides
- Bulged bases
- 9VTH|1|14|A|1361, 9VTH|1|14|U|1363, 9VTH|1|14|C|1366, 9VTH|1|14|G|1368
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9VTH_069 not in the Motif Atlas
- Homologous match to HL_9H3G_033
- Geometric discrepancy: 0.1717
- The information below is about HL_9H3G_033
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9VTH|1|14|C|1359
9VTH|1|14|A|1360
9VTH|1|14|A|1361
9VTH|1|14|G|1362
9VTH|1|14|U|1363
9VTH|1|14|G|1364
9VTH|1|14|C|1365
9VTH|1|14|C|1366
9VTH|1|14|A|1367
9VTH|1|14|G|1368
9VTH|1|14|G|1369
Current chains
- Chain 14
- 25S rRNA
Nearby chains
- Chain LD
- 60S ribosomal protein L4-like
- Chain LP
- 60S ribosomal protein L7-4-like
- Chain LV
- 60S ribosomal protein L18-2
- Chain Lc
- 60S ribosomal protein L28-1-like
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