HL_9VTH_071

3D structure

PDB id

9VTH (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

AUGAGAACU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9VTH_071 not in the Motif Atlas

Homologous match to HL_9H3G_035

Geometric discrepancy: 0.0854

The information below is about HL_9H3G_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33597.8

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

142

Unit IDs

9VTH|1|14|A|1473
9VTH|1|14|U|1474
9VTH|1|14|G|1475
9VTH|1|14|A|1476
9VTH|1|14|G|1477
9VTH|1|14|A|1478
9VTH|1|14|A|1479
9VTH|1|14|C|1480
9VTH|1|14|U|1481

Current chains

Chain 14

25S rRNA

Nearby chains

Chain LL

60S ribosomal protein L17-1 isoform X2

Chain LW

Ribosomal protein L19

Chain Lf

60S ribosomal protein L31