HL_9VTH_073

3D structure

PDB id

9VTH (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

GGAACC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9VTH_073 not in the Motif Atlas

Homologous match to HL_8GLP_035

Geometric discrepancy: 0.1305

The information below is about HL_8GLP_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34789.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

456

Unit IDs

9VTH|1|14|G|1555
9VTH|1|14|G|1556
9VTH|1|14|A|1557
9VTH|1|14|A|1558
9VTH|1|14|C|1559
9VTH|1|14|C|1560

Current chains

Chain 14

25S rRNA

Nearby chains

Chain LU

Ribosomal protein L15

Chain Lk

Ribosomal protein L37