HL_9VTH_075

3D structure

PDB id

9VTH (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

GUUAAAAUUC

Length

10 nucleotides

Bulged bases

9VTH|1|14|U|1611, 9VTH|1|14|U|1612

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9VTH_075 not in the Motif Atlas

Homologous match to HL_9PN5_034

Geometric discrepancy: 0.0898

The information below is about HL_9PN5_034

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77449.4

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

18

Unit IDs

9VTH|1|14|G|1604
9VTH|1|14|U|1605
9VTH|1|14|U|1606
9VTH|1|14|A|1607
9VTH|1|14|A|1608
9VTH|1|14|A|1609
9VTH|1|14|A|1610
9VTH|1|14|U|1611
9VTH|1|14|U|1612
9VTH|1|14|C|1613

Current chains

Chain 14

25S rRNA

Nearby chains

Chain LM

Large ribosomal subunit protein uL23

Chain LW

Ribosomal protein L19

Chain Li

Large ribosomal subunit protein eL34

Chain Lm

60S ribosomal protein L39-3