HL_9VTH_078

3D structure

PDB id

9VTH (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

ACUCAGU

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9VTH_078 not in the Motif Atlas

Homologous match to HL_9H3G_042

Geometric discrepancy: 0.0786

The information below is about HL_9H3G_042

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_67772.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

9VTH|1|14|A|1724
9VTH|1|14|C|1725
9VTH|1|14|U|1726
9VTH|1|14|C|1727
9VTH|1|14|A|1728
9VTH|1|14|G|1729
9VTH|1|14|U|1730

Current chains

Chain 14

25S rRNA

Nearby chains

Chain LW

Ribosomal protein L19

Chain Lq

60S ribosomal protein L37a