HL_9VTH_079

3D structure

PDB id

9VTH (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

CACGUCGCG

Length

9 nucleotides

Bulged bases

9VTH|1|14|U|1768, 9VTH|1|14|C|1769, 9VTH|1|14|G|1770, 9VTH|1|14|C|1771

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9VTH_079 not in the Motif Atlas

Homologous match to HL_9H3G_043

Geometric discrepancy: 0.165

The information below is about HL_9H3G_043

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_55735.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

9VTH|1|14|C|1764
9VTH|1|14|A|1765
9VTH|1|14|C|1766
9VTH|1|14|G|1767
9VTH|1|14|U|1768
9VTH|1|14|C|1769
9VTH|1|14|G|1770
9VTH|1|14|C|1771
9VTH|1|14|G|1772

Current chains

Chain 14

25S rRNA

Nearby chains

Chain LM

Large ribosomal subunit protein uL23

Chain LW

Ribosomal protein L19

Chain LZ

Large ribosomal subunit protein eL22