HL_9VTH_083

3D structure

PDB id

9VTH (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

9VTH|1|14|U|1931

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9VTH_083 not in the Motif Atlas

Homologous match to HL_9PN5_042

Geometric discrepancy: 0.0708

The information below is about HL_9PN5_042

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_61337.7

Basepair signature

cWW-tSW-F

Number of instances in this motif group

72

Unit IDs

9VTH|1|14|C|1929
9VTH|1|14|U|1930
9VTH|1|14|U|1931
9VTH|1|14|C|1932
9VTH|1|14|G|1933
9VTH|1|14|G|1934

Current chains

Chain 14

25S rRNA

Nearby chains

Chain 11

Small subunit ribosomal RNA; SSU rRNA

Chain Lo

60s ribosomal protein l41-like

Chain Lq

60S ribosomal protein L37a