HL_9VTH_084

3D structure

PDB id

9VTH (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

GGUAC

Length

5 nucleotides

Bulged bases

9VTH|1|14|G|2115

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9VTH_084 not in the Motif Atlas

Homologous match to HL_9H3G_048

Geometric discrepancy: 0.097

The information below is about HL_9H3G_048

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_16651.3

Basepair signature

cWW-F

Number of instances in this motif group

2

Unit IDs

9VTH|1|14|G|2114
9VTH|1|14|G|2115
9VTH|1|14|U|2116
9VTH|1|14|A|2117
9VTH|1|14|C|2118

Current chains

Chain 14

25S rRNA

Nearby chains

Chain LW

Ribosomal protein L19

Chain La

60S ribosomal protein L24