HL_9VTH_085

3D structure

PDB id

9VTH (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

UUUAAUUAAAA

Length

11 nucleotides

Bulged bases

9VTH|1|14|A|2142, 9VTH|1|14|A|2143, 9VTH|1|14|U|2144, 9VTH|1|14|A|2148

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9VTH_085 not in the Motif Atlas

Homologous match to HL_9H3G_049

Geometric discrepancy: 0.0889

The information below is about HL_9H3G_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_87681.4

Basepair signature

cWW-tWH-tWH-F

Number of instances in this motif group

11

Unit IDs

9VTH|1|14|U|2139
9VTH|1|14|U|2140
9VTH|1|14|U|2141
9VTH|1|14|A|2142
9VTH|1|14|A|2143
9VTH|1|14|U|2144
9VTH|1|14|U|2145
9VTH|1|14|A|2146
9VTH|1|14|A|2147
9VTH|1|14|A|2148
9VTH|1|14|A|2149

Current chains

Chain 14

25S rRNA

Nearby chains

Chain LB

60S ribosomal protein L8-like

Chain Lk

Ribosomal protein L37