HL_9VTH_096

3D structure

PDB id

9VTH (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

AACAGAAAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9VTH_096 not in the Motif Atlas

Homologous match to HL_9H3G_057

Geometric discrepancy: 0.0971

The information below is about HL_9H3G_057

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02452.4

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

10

Unit IDs

9VTH|1|14|A|2676
9VTH|1|14|A|2677
9VTH|1|14|C|2678
9VTH|1|14|A|2679
9VTH|1|14|G|2680
9VTH|1|14|A|2681
9VTH|1|14|A|2682
9VTH|1|14|A|2683
9VTH|1|14|U|2684

Current chains

Chain 14

25S rRNA

Nearby chains

Chain LE

60S ribosomal protein L11-1