HL_9VTH_101

3D structure

PDB id

9VTH (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

CGUUCAUAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9VTH_101 not in the Motif Atlas

Homologous match to HL_9H3G_062

Geometric discrepancy: 0.1014

The information below is about HL_9H3G_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_52011.4

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

9VTH|1|14|C|2843
9VTH|1|14|G|2844
9VTH|1|14|U|2845
9VTH|1|14|U|2846
9VTH|1|14|C|2847
9VTH|1|14|A|2848
9VTH|1|14|U|2849
9VTH|1|14|A|2850
9VTH|1|14|G|2851

Current chains

Chain 14

25S rRNA

Nearby chains

Chain LJ

60S ribosomal protein L10

Chain Ln

Ubiquitin-60S ribosomal protein L40