HL_9VTH_106

3D structure

PDB id

9VTH (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

UGAAAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9VTH_106 not in the Motif Atlas

Homologous match to HL_8GLP_071

Geometric discrepancy: 0.1103

The information below is about HL_8GLP_071

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_12125.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

16

Unit IDs

9VTH|1|14|U|3070
9VTH|1|14|G|3071
9VTH|1|14|A|3072
9VTH|1|14|A|3073
9VTH|1|14|A|3074
9VTH|1|14|A|3075

Current chains

Chain 14

25S rRNA

Nearby chains

Chain LW

Ribosomal protein L19

Chain LZ

Large ribosomal subunit protein eL22

Chain Lf

60S ribosomal protein L31