HL_9VTH_107

3D structure

PDB id

9VTH (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

CUGAACGCCUCUAAG

Length

15 nucleotides

Bulged bases

9VTH|1|14|G|3118, 9VTH|1|14|C|3122

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9VTH_107 not in the Motif Atlas

Homologous match to HL_9H3G_068

Geometric discrepancy: 0.1043

The information below is about HL_9H3G_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53269.5

Basepair signature

cWW-tWH-tSH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

13

Unit IDs

9VTH|1|14|C|3112
9VTH|1|14|U|3113
9VTH|1|14|G|3114
9VTH|1|14|A|3115
9VTH|1|14|A|3116
9VTH|1|14|C|3117
9VTH|1|14|G|3118
9VTH|1|14|C|3119
9VTH|1|14|C|3120
9VTH|1|14|U|3121
9VTH|1|14|C|3122
9VTH|1|14|U|3123
9VTH|1|14|A|3124
9VTH|1|14|A|3125
9VTH|1|14|G|3126

Current chains

Chain 14

25S rRNA

Nearby chains

Chain LF

60S ribosomal protein L9-1

Chain LG

60S ribosomal protein L13a-4

Chain Ln

Ubiquitin-60S ribosomal protein L40