HL_9VTH_108

3D structure

PDB id

9VTH (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

CUUUG

Length

5 nucleotides

Bulged bases

9VTH|1|14|U|3192, 9VTH|1|14|U|3193

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9VTH_108 not in the Motif Atlas

Geometric match to HL_5AH5_007

Geometric discrepancy: 0.3543

The information below is about HL_5AH5_007

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_90436.7

Basepair signature

cWW-F

Number of instances in this motif group

43

Unit IDs

9VTH|1|14|C|3190
9VTH|1|14|U|3191
9VTH|1|14|U|3192
9VTH|1|14|U|3193
9VTH|1|14|G|3194

Current chains

Chain 14

25S rRNA

Nearby chains

Chain LF

60S ribosomal protein L9-1