HL_9VTH_110

3D structure

PDB id

9VTH (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

GCAGACGAC

Length

9 nucleotides

Bulged bases

9VTH|1|14|C|3296

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9VTH_110 not in the Motif Atlas

Homologous match to HL_9PN5_068

Geometric discrepancy: 0.0762

The information below is about HL_9PN5_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_37889.4

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

14

Unit IDs

9VTH|1|14|G|3295
9VTH|1|14|C|3296
9VTH|1|14|A|3297
9VTH|1|14|G|3298
9VTH|1|14|A|3299
9VTH|1|14|C|3300
9VTH|1|14|G|3301
9VTH|1|14|A|3302
9VTH|1|14|C|3303

Current chains

Chain 14

25S rRNA

Nearby chains

Chain LC

60S ribosomal protein L3

Chain LL

60S ribosomal protein L17-1 isoform X2