HL_9VTH_113
3D structure
- PDB id
- 9VTH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- GCUCAU(T6A)AC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: T6A
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9VTH_113 not in the Motif Atlas
- Homologous match to HL_9MTS_102
- Geometric discrepancy: 0.107
- The information below is about HL_9MTS_102
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_81376.5
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 45
Unit IDs
9VTH|1|16|G|31
9VTH|1|16|C|32
9VTH|1|16|U|33
9VTH|1|16|C|34
9VTH|1|16|A|35
9VTH|1|16|U|36
9VTH|1|16|T6A|37
9VTH|1|16|A|38
9VTH|1|16|C|39
Current chains
- Chain 16
- tRNA(iMet)
Nearby chains
- Chain 11
- Small subunit ribosomal RNA; SSU rRNA
- Chain 15
- RNA (5'-R(P*AP*CP*AP*AP*UP*G)-3')
- Chain SG
- 40S ribosomal protein S16
- Chain SO
- 40S ribosomal protein S15-like
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