HL_9VTH_114

3D structure

PDB id

9VTH (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

GAUCG(1MA)AAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 1MA

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9VTH_114 not in the Motif Atlas

Homologous match to HL_1QU2_003

Geometric discrepancy: 0.1964

The information below is about HL_1QU2_003

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.8

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

142

Unit IDs

9VTH|1|16|G|53
9VTH|1|16|A|54
9VTH|1|16|U|55
9VTH|1|16|C|56
9VTH|1|16|G|57
9VTH|1|16|1MA|58
9VTH|1|16|A|59
9VTH|1|16|A|60
9VTH|1|16|C|61

Current chains

Chain 16

tRNA(iMet)

Nearby chains

Chain 14

Large subunit ribosomal RNA; LSU rRNA

Chain LE

60S ribosomal protein L11-1