HL_9VVI_040

3D structure

PDB id

9VVI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of SecM-arrested 70S ribosome with YheS

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

GGAAAC

Length

6 nucleotides

Bulged bases

9VVI|1|a|A|125

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9VVI_040 not in the Motif Atlas

Homologous match to HL_7A0S_003

Geometric discrepancy: 0.1701

The information below is about HL_7A0S_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_82710.4

Basepair signature

cWW-F-F-F

Number of instances in this motif group

5

Unit IDs

9VVI|1|a|G|123
9VVI|1|a|G|124
9VVI|1|a|A|125
9VVI|1|a|A|126
9VVI|1|a|A|127
9VVI|1|a|C|128

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L34

Chain s

Large ribosomal subunit protein uL23