HL_9VVI_055

3D structure

PDB id

9VVI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of SecM-arrested 70S ribosome with YheS

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

CGAAUAG

Length

7 nucleotides

Bulged bases

9VVI|1|a|U|615

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9VVI_055 not in the Motif Atlas

Geometric match to HL_8B0X_049

Geometric discrepancy: 0.1068

The information below is about HL_8B0X_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34789.6

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

434

Unit IDs

9VVI|1|a|C|611
9VVI|1|a|G|612
9VVI|1|a|A|613
9VVI|1|a|A|614
9VVI|1|a|U|615
9VVI|1|a|A|616
9VVI|1|a|G|617

Current chains

Chain a

23S rRNA

Nearby chains

Chain e

50S ribosomal protein L4