HL_9VVI_062

3D structure

PDB id

9VVI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of SecM-arrested 70S ribosome with YheS

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

CAUCCCG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9VVI_062 not in the Motif Atlas

Geometric match to HL_8B0X_056

Geometric discrepancy: 0.2061

The information below is about HL_8B0X_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_67772.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

14

Unit IDs

9VVI|1|a|C|885
9VVI|1|a|A|886
9VVI|1|a|U|887
9VVI|1|a|C|888
9VVI|1|a|C|889
9VVI|1|a|C|890
9VVI|1|a|G|891

Current chains

Chain a

23S rRNA

Nearby chains

Chain M

Small ribosomal subunit protein uS13