HL_9VVI_070

3D structure

PDB id

9VVI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of SecM-arrested 70S ribosome with YheS

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

CGACGGUUG

Length

9 nucleotides

Bulged bases

9VVI|1|a|A|1453, 9VVI|1|a|C|1454

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9VVI_070 not in the Motif Atlas

Geometric match to HL_8B0X_064

Geometric discrepancy: 0.0563

The information below is about HL_8B0X_064

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_00557.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

2

Unit IDs

9VVI|1|a|C|1451
9VVI|1|a|G|1452
9VVI|1|a|A|1453
9VVI|1|a|C|1454
9VVI|1|a|G|1455
9VVI|1|a|G|1456
9VVI|1|a|U|1457
9VVI|1|a|U|1458
9VVI|1|a|G|1459

Current chains

Chain a

23S rRNA

Nearby chains

Chain m

Large ribosomal subunit protein bL17