HL_9VVI_082
3D structure
- PDB id
- 9VVI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of SecM-arrested 70S ribosome with YheS
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.82 Å
Loop
- Sequence
- G(PSU)AAC(3TD)A(PSU)AAC
- Length
- 11 nucleotides
- Bulged bases
- 9VVI|1|a|A|1913
- QA status
- Modified nucleotides: PSU, 3TD
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9VVI_082 not in the Motif Atlas
- Geometric match to HL_9H3G_052
- Geometric discrepancy: 0.0868
- The information below is about HL_9H3G_052
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_82185.3
- Basepair signature
- cWW-F-F-tHW-F-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
9VVI|1|a|G|1910
9VVI|1|a|PSU|1911
9VVI|1|a|A|1912
9VVI|1|a|A|1913
9VVI|1|a|C|1914
9VVI|1|a|3TD|1915
9VVI|1|a|A|1916
9VVI|1|a|PSU|1917
9VVI|1|a|A|1918
9VVI|1|a|A|1919
9VVI|1|a|C|1920
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain A
- Small subunit ribosomal RNA; SSU rRNA
- Chain X
- SecM mRNA
- Chain Y
- Transfer RNA; tRNA
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