HL_9VVI_088
3D structure
- PDB id
- 9VVI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of SecM-arrested 70S ribosome with YheS
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.82 Å
Loop
- Sequence
- CUAAAGAGUAACG
- Length
- 13 nucleotides
- Bulged bases
- 9VVI|1|a|A|2268, 9VVI|1|a|C|2275
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9VVI_088 not in the Motif Atlas
- Homologous match to HL_7A0S_053
- Geometric discrepancy: 0.1109
- The information below is about HL_7A0S_053
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_02042.3
- Basepair signature
- cWW-tSH-tHH-tWW-F-F-F
- Number of instances in this motif group
- 13
Unit IDs
9VVI|1|a|C|2264
9VVI|1|a|U|2265
9VVI|1|a|A|2266
9VVI|1|a|A|2267
9VVI|1|a|A|2268
9VVI|1|a|G|2269
9VVI|1|a|A|2270
9VVI|1|a|G|2271
9VVI|1|a|U|2272
9VVI|1|a|A|2273
9VVI|1|a|A|2274
9VVI|1|a|C|2275
9VVI|1|a|G|2276
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain l
- 50S ribosomal protein L16
- Chain v
- Large ribosomal subunit protein bL27
Coloring options: