HL_9VVI_090
3D structure
- PDB id
- 9VVI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of SecM-arrested 70S ribosome with YheS
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.82 Å
Loop
- Sequence
- UGCAAUGG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9VVI_090 not in the Motif Atlas
- Homologous match to HL_7A0S_055
- Geometric discrepancy: 0.2097
- The information below is about HL_7A0S_055
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_52651.4
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 31
Unit IDs
9VVI|1|a|U|2324
9VVI|1|a|G|2325
9VVI|1|a|C|2326
9VVI|1|a|A|2327
9VVI|1|a|A|2328
9VVI|1|a|U|2329
9VVI|1|a|G|2330
9VVI|1|a|G|2331
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain f
- Large ribosomal subunit protein uL5
- Chain l
- 50S ribosomal protein L16
- Chain v
- Large ribosomal subunit protein bL27
Coloring options: