HL_9VVI_093

3D structure

PDB id

9VVI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of SecM-arrested 70S ribosome with YheS

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

UGAAUGGAAG

Length

10 nucleotides

Bulged bases

9VVI|1|a|A|2406

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9VVI_093 not in the Motif Atlas

Homologous match to HL_7A0S_058

Geometric discrepancy: 0.177

The information below is about HL_7A0S_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_51853.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

9VVI|1|a|U|2404
9VVI|1|a|G|2405
9VVI|1|a|A|2406
9VVI|1|a|A|2407
9VVI|1|a|U|2408
9VVI|1|a|G|2409
9VVI|1|a|G|2410
9VVI|1|a|A|2411
9VVI|1|a|A|2412
9VVI|1|a|G|2413

Current chains

Chain a

23S rRNA

Nearby chains

Chain k

50S ribosomal protein L15