HL_9VVI_100
3D structure
- PDB id
- 9VVI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of SecM-arrested 70S ribosome with YheS
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.82 Å
Loop
- Sequence
- CUGAAAGCAUCUAAG
- Length
- 15 nucleotides
- Bulged bases
- 9VVI|1|a|G|2751, 9VVI|1|a|C|2755
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9VVI_100 not in the Motif Atlas
- Homologous match to HL_7A0S_065
- Geometric discrepancy: 0.2454
- The information below is about HL_7A0S_065
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_53269.4
- Basepair signature
- cWW-tWH-tSH-cWH-tSH-tHW-tHW-tSW
- Number of instances in this motif group
- 12
Unit IDs
9VVI|1|a|C|2745
9VVI|1|a|U|2746
9VVI|1|a|G|2747
9VVI|1|a|A|2748
9VVI|1|a|A|2749
9VVI|1|a|A|2750
9VVI|1|a|G|2751
9VVI|1|a|C|2752
9VVI|1|a|A|2753
9VVI|1|a|U|2754
9VVI|1|a|C|2755
9VVI|1|a|U|2756
9VVI|1|a|A|2757
9VVI|1|a|A|2758
9VVI|1|a|G|2759
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain 3
- 50S ribosomal protein L36
- Chain g
- Large ribosomal subunit protein uL6
- Chain i
- 50S ribosomal protein L13
Coloring options: