HL_9VXM_009

3D structure

PDB id

9VXM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitoribosome in a non-rotated state, with multiple neomycin molecules bound, featuring A/A-site and P/P-site tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GCGACAAAC

Length

9 nucleotides

Bulged bases

9VXM|1|A|A|1991, 9VXM|1|A|A|1994

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9VXM_009 not in the Motif Atlas

Geometric match to HL_9E6Q_025

Geometric discrepancy: 0.2126

The information below is about HL_9E6Q_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_28253.1

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

9VXM|1|A|G|1988
9VXM|1|A|C|1989
9VXM|1|A|G|1990
9VXM|1|A|A|1991
9VXM|1|A|C|1992
9VXM|1|A|A|1993
9VXM|1|A|A|1994
9VXM|1|A|A|1995
9VXM|1|A|C|1996

Current chains

Chain A

16S mitochondrial rRNA

Nearby chains

Chain 2

Large ribosomal subunit protein bL34m

Chain D

Large ribosomal subunit protein uL2m

Chain d

Large ribosomal subunit protein mL45