HL_9VXM_014
3D structure
- PDB id
- 9VXM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human mitoribosome in a non-rotated state, with multiple neomycin molecules bound, featuring A/A-site and P/P-site tRNAs
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CCUAAAAGCAG
- Length
- 11 nucleotides
- Bulged bases
- 9VXM|1|A|A|2181
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9VXM_014 not in the Motif Atlas
- Homologous match to HL_1MMS_003
- Geometric discrepancy: 0.178
- The information below is about HL_1MMS_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_20174.2
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
9VXM|1|A|C|2175
9VXM|1|A|C|2176
9VXM|1|A|U|2177
9VXM|1|A|A|2178
9VXM|1|A|A|2179
9VXM|1|A|A|2180
9VXM|1|A|A|2181
9VXM|1|A|G|2182
9VXM|1|A|C|2183
9VXM|1|A|A|2184
9VXM|1|A|G|2185
Current chains
- Chain A
- 16S mitochondrial rRNA
Nearby chains
- Chain J
- Large ribosomal subunit protein uL11m
- Chain l
- Large ribosomal subunit protein mL54
Coloring options: