HL_9VXM_015

3D structure

PDB id

9VXM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitoribosome in a non-rotated state, with multiple neomycin molecules bound, featuring A/A-site and P/P-site tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGUUCAAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9VXM_015 not in the Motif Atlas

Homologous match to HL_6PRV_002

Geometric discrepancy: 0.1405

The information below is about HL_6PRV_002

Detailed Annotation

GNRA with tandem sheared

Broad Annotation

No text annotation

Motif group

HL_98423.5

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

9VXM|1|A|C|2202
9VXM|1|A|G|2203
9VXM|1|A|U|2204
9VXM|1|A|U|2205
9VXM|1|A|C|2206
9VXM|1|A|A|2207
9VXM|1|A|A|2208
9VXM|1|A|G|2209

Current chains

Chain A

16S mitochondrial rRNA

Nearby chains

Chain 4

Large ribosomal subunit protein bL36m

Chain J

Large ribosomal subunit protein uL11m

Chain l

Large ribosomal subunit protein mL54