HL_9VXM_017
3D structure
- PDB id
- 9VXM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human mitoribosome in a non-rotated state, with multiple neomycin molecules bound, featuring A/A-site and P/P-site tRNAs
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- AAACAU
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9VXM_017 not in the Motif Atlas
- Geometric match to HL_6DME_002
- Geometric discrepancy: 0.2486
- The information below is about HL_6DME_002
- Detailed Annotation
- UNCG variation
- Broad Annotation
- UNCG variation
- Motif group
- HL_13571.1
- Basepair signature
- cWW-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
9VXM|1|A|A|2319
9VXM|1|A|A|2320
9VXM|1|A|A|2321
9VXM|1|A|C|2322
9VXM|1|A|A|2323
9VXM|1|A|U|2324
Current chains
- Chain A
- 16S mitochondrial rRNA
Nearby chains
- Chain 0
- Large ribosomal subunit protein bL32m
- Chain O
- Large ribosomal subunit protein bL17m
- Chain s
- Large ribosomal subunit protein mL65
Coloring options: