HL_9VXM_027

3D structure

PDB id

9VXM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitoribosome in a non-rotated state, with multiple neomycin molecules bound, featuring A/A-site and P/P-site tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UUG(OMG)GGCGA

Length

9 nucleotides

Bulged bases

9VXM|1|A|G|2814

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9VXM_027 not in the Motif Atlas

Homologous match to HL_7A0S_052

Geometric discrepancy: 0.1101

The information below is about HL_7A0S_052

Detailed Annotation

LSU P loop

Broad Annotation

LSU P loop

Motif group

HL_11974.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

19

Unit IDs

9VXM|1|A|U|2812
9VXM|1|A|U|2813
9VXM|1|A|G|2814
9VXM|1|A|OMG|2815
9VXM|1|A|G|2816
9VXM|1|A|G|2817
9VXM|1|A|C|2818
9VXM|1|A|G|2819
9VXM|1|A|A|2820

Current chains

Chain A

16S mitochondrial rRNA

Nearby chains

Chain Ax

Transfer RNA; tRNA

Chain N

Large ribosomal subunit protein uL16m

Chain W

Large ribosomal subunit protein bL27m