HL_9VXM_031

3D structure

PDB id

9VXM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitoribosome in a non-rotated state, with multiple neomycin molecules bound, featuring A/A-site and P/P-site tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AGUCCAUAU

Length

9 nucleotides

Bulged bases

9VXM|1|A|U|2960

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9VXM_031 not in the Motif Atlas

Homologous match to HL_7A0S_059

Geometric discrepancy: 0.2752

The information below is about HL_7A0S_059

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_52011.3

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

9VXM|1|A|A|2958
9VXM|1|A|G|2959
9VXM|1|A|U|2960
9VXM|1|A|C|2961
9VXM|1|A|C|2962
9VXM|1|A|A|2963
9VXM|1|A|U|2964
9VXM|1|A|A|2965
9VXM|1|A|U|2966

Current chains

Chain A

16S mitochondrial rRNA

Nearby chains

Chain 4

Large ribosomal subunit protein bL36m

Chain Aw

A/A-tRNA

Chain N

Large ribosomal subunit protein uL16m