HL_9VXM_032

3D structure

PDB id

9VXM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitoribosome in a non-rotated state, with multiple neomycin molecules bound, featuring A/A-site and P/P-site tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UGCAGCCG

Length

8 nucleotides

Bulged bases

9VXM|1|A|G|3016

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9VXM_032 not in the Motif Atlas

Homologous match to HL_7A0S_060

Geometric discrepancy: 0.1846

The information below is about HL_7A0S_060

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_02262.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

36

Unit IDs

9VXM|1|A|U|3015
9VXM|1|A|G|3016
9VXM|1|A|C|3017
9VXM|1|A|A|3018
9VXM|1|A|G|3019
9VXM|1|A|C|3020
9VXM|1|A|C|3021
9VXM|1|A|G|3022

Current chains

Chain A

16S mitochondrial rRNA

Nearby chains

Chain 4

Large ribosomal subunit protein bL36m