HL_9VXM_051

3D structure

PDB id

9VXM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitoribosome in a non-rotated state, with multiple neomycin molecules bound, featuring A/A-site and P/P-site tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CCACAG

Length

6 nucleotides

Bulged bases

9VXM|1|AA|C|1151, 9VXM|1|AA|A|1154

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9VXM_051 not in the Motif Atlas

Geometric match to HL_5E08_001

Geometric discrepancy: 0.3872

The information below is about HL_5E08_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89167.4

Basepair signature

cWW-F-F

Number of instances in this motif group

20

Unit IDs

9VXM|1|AA|C|1150
9VXM|1|AA|C|1151
9VXM|1|AA|A|1152
9VXM|1|AA|C|1153
9VXM|1|AA|A|1154
9VXM|1|AA|G|1155

Current chains

Chain AA

12S mitochondrial rRNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain A3

Small ribosomal subunit protein mS38

Chain AL

Small ribosomal subunit protein uS15m