HL_9VXM_060

3D structure

PDB id

9VXM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitoribosome in a non-rotated state, with multiple neomycin molecules bound, featuring A/A-site and P/P-site tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UUAAACAAA

Length

9 nucleotides

Bulged bases

9VXM|1|Aw|A|16, 9VXM|1|Aw|C|20

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9VXM_060 not in the Motif Atlas

Geometric match to HL_1F7U_001

Geometric discrepancy: 0.2948

The information below is about HL_1F7U_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_55043.2

Basepair signature

cWW-tSH-cWS-F

Number of instances in this motif group

5

Unit IDs

9VXM|1|Aw|U|12
9VXM|1|Aw|U|13
9VXM|1|Aw|A|14
9VXM|1|Aw|A|15
9VXM|1|Aw|A|16
9VXM|1|Aw|C|20
9VXM|1|Aw|A|21
9VXM|1|Aw|A|22
9VXM|1|Aw|A|23

Current chains

Chain Aw

A/A-tRNA

Nearby chains

Chain 8

Large ribosomal subunit protein mL40

Chain A

Large subunit ribosomal RNA; LSU rRNA