HL_9VXM_061
3D structure
- PDB id
- 9VXM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human mitoribosome in a non-rotated state, with multiple neomycin molecules bound, featuring A/A-site and P/P-site tRNAs
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- AUUAACACU
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9VXM_061 not in the Motif Atlas
- Geometric match to HL_4YCO_002
- Geometric discrepancy: 0.1208
- The information below is about HL_4YCO_002
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_81376.4
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 44
Unit IDs
9VXM|1|Aw|A|31
9VXM|1|Aw|U|32
9VXM|1|Aw|U|33
9VXM|1|Aw|A|34
9VXM|1|Aw|A|35
9VXM|1|Aw|C|36
9VXM|1|Aw|A|37
9VXM|1|Aw|C|38
9VXM|1|Aw|U|39
Current chains
- Chain Aw
- A/A-tRNA
Nearby chains
- Chain 8
- Large ribosomal subunit protein mL40
- Chain AA
- Small subunit ribosomal RNA; SSU rRNA
- Chain AD
- Small ribosomal subunit protein uS5m
- Chain Az
- mRNA
Coloring options: