HL_9VXM_064
3D structure
- PDB id
- 9VXM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human mitoribosome in a non-rotated state, with multiple neomycin molecules bound, featuring A/A-site and P/P-site tRNAs
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- ACUCAUAUU
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9VXM_064 not in the Motif Atlas
- Homologous match to HL_5J8B_109
- Geometric discrepancy: 0.1296
- The information below is about HL_5J8B_109
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_81376.4
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 44
Unit IDs
9VXM|1|Ax|A|31
9VXM|1|Ax|C|32
9VXM|1|Ax|U|33
9VXM|1|Ax|C|34
9VXM|1|Ax|A|35
9VXM|1|Ax|U|36
9VXM|1|Ax|A|37
9VXM|1|Ax|U|38
9VXM|1|Ax|U|39
Current chains
- Chain Ax
- P/P-tRNA
Nearby chains
- Chain 8
- Large ribosomal subunit protein mL40
- Chain AA
- Small subunit ribosomal RNA; SSU rRNA
- Chain AG
- Small ribosomal subunit protein uS9m
- Chain Az
- mRNA
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